Ok not sure the actual tires and gears you have but im assuming that the tune is right, that aside i see something that dont look good.
Auto Shift Speed>Full Throttle Shift Speed, 1-2 Shift is 73mph and 2-3 is 79mph, but your Full Throttle Shift RPM is 5k to me that seems like there is a issue between the rpm and shift speeds at WOT
Do you have a log of the issues you are having if not use this link and download Trans.cfg
http://ls1tuningguide.com/files/free...s/cfgfiles.php
That may helps us see rpms shift pressures etc.