Several emails about the problem and the final answer is:
"software version 3.0 has a much more robust dtc polling feature than previous versions, if its detecting dtc's its because they are being set and the software is detecting them. It is not a glitch.
William Henn
HP Tuners LLC"
How about reading the problem, reading the Tune and other data supplied, and staying within the scope/context of the problem. Simple problem solving techniques. This answer is complete BS. The problem is not that there is a DTC, it is that it is picking up the DTC and the Tune has the DTC turned off.
Details: HP Tuners Problem
Version 3.0.56 has the following DTCs that will not clear:
0x7E8: P0036 - HO2S Heater Control Circuit (Bank 1, Sensor 2) (Permanant)
0x7E8: P0056 - HO2S Heater Control Circuit (Bank 2, Sensor 2) (Permanant)
Theses codes are turned off on the Tune file.
I loaded an old program, Version 2.24.1170 and it shows no DTCs