LX9 Swap has a high timing issue

[SlowButFast]

I swapped a LX9 into a 2002 Oldsmobile Alero, but ever since I got the car running it has had very abnormal timing. Along with the high timing is high knock, but I believe the KR will settle once I get the timing straight.
I was looking how to fix what I think is a mechanical issue before tuning but after spending hours under the hood should I tune the timing down? I'm lost so anyone's perspective would be nice.

WHAT I HAVE DONE:
New crankshaft position sensor, performed CASE LEARN

Swapped parts from running vehicle:
coil packs, control module, MAF sensor

Short Log File, Stock Tune
alero high timing2.hpl

[Russ K]

Fix your Map sensor, it's at 10 KPA all the time.

Russ Kemp

[SlowButFast]

Thanks for looking at my log

I unplugged the MAP sensor intentionally, didn't know that was the log file I uploaded though. So after clearing my head today and wasting more time, I looked back at the stock tune for probably the third time. This whole time I couldn't understand what would add to or multiply my spark table so heavily. Turns out the only thing in the spark modifiers that is capable of doing this with a stock tune is the EGR table, which I have looked over and ignored in the past. First thing I do is unplug my EGR valve and go for a drive, EVERYTHING IS BACK TO NORMAL!!! Still have a little KR though, gotta work on that. Sorry for the long story, but I didn't know the EGR valve could make such a huge impact.

Hope this helps someone in the future. Never got a service engine light for this BTW.