I have not tried this on a FI car but this is how I would start.
Read and follow 'speed density' in the VCM help file (FOFF667)
Decide your Open and PE AFR first!
If you dont have wideband or 2bar, perhaps you should stop here!
If you do not have Wideband
dont use 'Data Logging' and 'Update HPT file' therefore do your VE table with LTFT, dont worry about PE at the moment. If you get boost and dont have the 2bar the last VE will be used.
When finished VE to 4000rpm then do 'Dialing in the MAF'.
At this point you have been tunning with o2 sensor that cannot really measure past Stoich (AFR 14.7) and you will be getting boost so you will be off your VE table as well
Tune the MAF up to 4000rpm. Now you will need to go put your car on the dyno: do part throttle calibrations above 4000rpm first than WOT, some people adjust PE but that is wrong!
Only changes to this is set your Open, PE AFR as well.
No short cuts, I would use wideband and 2bar.