If i were you, I'd use a stock tune with same OS as yours, license it and write entire to start over.
Who knows what issues your current tune may have and tuning around them isn't a good idea.
Ive had this problem before but i wasnt using HPT. It was a program i use for work called RocLink800. It would only happen when I had the power inverter hooked up to charge my laptop in my truck. Are you by chance using a power inverter?